metawards.extractors.output_incidence

metawards.extractors.output_incidence(population: metawards._population.Population, output_dir: metawards._outputfiles.OutputFiles, workspace: metawards._workspace.Workspace, **kwargs)

This will incidence of infection for each ward for each timestep. This is the sum of infections from disease class 0 to 2 inclusive

Parameters:

• network (Network) – The network over which the outbreak is being modelled
• population (Population) – The population experiencing the outbreak
• output_dir (OutputFiles) – The directory in which to place all output files
• workspace (Workspace) – A workspace that can be used to extract data
• kwargs – Extra argumentst that are ignored by this function