from .._network import Network
from ._array import create_int_array
__all__ = ["initialise_infections",
"initialise_play_infections"]
def initialise_infections(network: Network):
"""Initialise the data structure used to store the infections"""
params = network.params
if params is None:
return None
disease = params.disease_params
n = disease.N_INF_CLASSES()
infections = []
# 'infections' holds all of the infections recorded for every
# single link in network.to_links. 1-indexing is used throughout
# the code, hence why we size for n + 1
for _ in range(0, n):
infections.append(create_int_array(network.nlinks + 1))
return infections
[docs]def initialise_play_infections(network: Network):
"""Initialise the space used to store the play infections"""
params = network.params
if params is None:
return None
disease = params.disease_params
n = disease.N_INF_CLASSES()
infections = []
# the 'play_infections' holds the infections that occur in
# each ward (node) according to the 'play' rules. 1-indexing
# is used throughout the code, hence why we size for n + 1
for _ in range(0, n):
infections.append(create_int_array(network.nnodes+1))
return infections