MetaWards
0.8.2
Installation instructions
Model data
Tutorial
Usage
Running on a cluster
Documentation
Developer’s guide
Changelog
MetaWards
Docs
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Index
Index
_
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A
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B
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C
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D
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E
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F
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G
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H
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I
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L
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M
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N
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O
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P
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R
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S
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T
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U
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V
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W
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X
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Y
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Z
_
__init__() (metawards.Disease method)
(metawards.InputFiles method)
(metawards.Link method)
(metawards.Links method)
(metawards.Network method)
(metawards.Node method)
(metawards.Nodes method)
(metawards.OutputFiles method)
(metawards.Parameters method)
(metawards.Population method)
(metawards.Populations method)
(metawards.VariableSet method)
(metawards.VariableSets method)
(metawards.utils.NullProfiler method)
(metawards.utils.Profiler method)
(metawards.utils.Workspace method)
A
add_distances() (metawards.Network method)
add_seeds() (metawards.Parameters method)
add_wards_network_distance() (in module metawards.utils)
additional_seeds (metawards.Parameters attribute)
adjust() (metawards.VariableSet method)
advance_additional() (in module metawards.iterators)
advance_additional_omp() (in module metawards.iterators)
advance_fixed() (in module metawards.iterators)
advance_fixed_omp() (in module metawards.iterators)
advance_foi() (in module metawards.iterators)
advance_foi_omp() (in module metawards.iterators)
advance_imports() (in module metawards.iterators)
advance_imports_omp() (in module metawards.iterators)
advance_infprob() (in module metawards.iterators)
advance_infprob_omp() (in module metawards.iterators)
advance_play() (in module metawards.iterators)
advance_play_omp() (in module metawards.iterators)
advance_recovery() (in module metawards.iterators)
advance_recovery_omp() (in module metawards.iterators)
allocate_vaccination() (in module metawards.utils)
animate_plots() (in module metawards.analysis)
append() (metawards.Populations method)
(metawards.VariableSets method)
assert_not_null (metawards.Links attribute)
(metawards.Nodes attribute)
assert_sane() (metawards.Network method)
assert_sane_network() (in module metawards.utils)
assert_valid_index (metawards.Links attribute)
(metawards.Nodes attribute)
auto_bzip() (metawards.OutputFiles method)
B
begin_p (metawards.Node attribute)
begin_to (metawards.Node attribute)
begin_we (metawards.Node attribute)
beta (metawards.Disease attribute)
build() (metawards.Network static method)
build_custom_iterator() (in module metawards.iterators)
build_play_matrix() (in module metawards.utils)
build_wards_network() (in module metawards.utils)
C
child_total() (metawards.utils.Profiler method)
clear_all_infections() (in module metawards.utils)
cli() (in module metawards.app)
close() (metawards.OutputFiles method)
contrib_foi (metawards.Disease attribute)
create_average_plot() (in module metawards.analysis)
create_double_array() (in module metawards.utils)
create_int_array() (in module metawards.utils)
create_overview_plot() (in module metawards.analysis)
create_string_array() (in module metawards.utils)
create_thread_generators() (in module metawards.utils)
D
daily_imports (metawards.Parameters attribute)
date (metawards.Population attribute)
day (metawards.Population attribute)
delete_ran_binomial() (in module metawards.utils)
Disease (class in metawards)
disease_params (metawards.Parameters attribute)
E
end_p (metawards.Node attribute)
end_to (metawards.Node attribute)
extract_data() (in module metawards.utils)
extract_default() (in module metawards.extractors)
extract_values() (metawards.VariableSet static method)
F
fill_in_gaps() (in module metawards.utils)
fingerprint() (metawards.VariableSet method)
flush() (metawards.OutputFiles method)
G
get_available_num_threads() (in module metawards.utils)
get_cores_per_node() (in module metawards.app)
get_filename() (metawards.OutputFiles method)
get_hostfile() (in module metawards.app)
get_min_max_distances() (in module metawards.utils)
(metawards.Network method)
get_number_of_processes() (in module metawards.utils)
get_parallel_scheme() (in module metawards.app)
get_path() (metawards.OutputFiles method)
get_repository() (metawards.Parameters static method)
get_threads_per_task() (in module metawards.app)
get_version_string() (in module metawards)
,
[1]
H
how_many_vaccinated() (in module metawards.utils)
I
id (metawards.Node attribute)
identifier (metawards.InputFiles attribute)
identifier2 (metawards.InputFiles attribute)
import_animate_modules() (in module metawards.analysis)
import_graphics_modules() (in module metawards.analysis)
infecteds (metawards.Population attribute)
initial (metawards.Population attribute)
initial_inf (metawards.Parameters attribute)
initialise_infections() (in module metawards.utils)
(metawards.Network method)
initialise_play_infections() (in module metawards.utils)
(metawards.Network method)
input_files (metawards.Parameters attribute)
InputFiles (class in metawards)
is_closed() (metawards.OutputFiles method)
is_null (metawards.Links attribute)
(metawards.Nodes attribute)
is_null() (metawards.utils.Profiler method)
is_open() (metawards.OutputFiles method)
iterate() (in module metawards.utils)
iterate_custom() (in module metawards.iterators)
iterate_default() (in module metawards.iterators)
iterate_weekday() (in module metawards.iterators)
iterate_weekend() (in module metawards.iterators)
iterate_working_week() (in module metawards.iterators)
iterator_needs_setup() (in module metawards.iterators)
L
label (metawards.Node attribute)
latent (metawards.Population attribute)
length_day (metawards.Parameters attribute)
Link (class in metawards)
Links (class in metawards)
load() (metawards.Disease static method)
(metawards.InputFiles static method)
(metawards.Parameters static method)
M
make_compatible_with() (metawards.VariableSet method)
max_links (metawards.Network attribute)
max_nodes (metawards.Network attribute)
metawards (module)
metawards.analysis (module)
metawards.app (module)
metawards.extractors (module)
metawards.iterators (module)
metawards.utils (module)
model_name() (metawards.InputFiles method)
model_path() (metawards.InputFiles method)
model_version() (metawards.InputFiles method)
move_from_play_to_work() (metawards.Network method)
move_population_from_play_to_work() (in module metawards.utils)
move_population_from_work_to_play() (in module metawards.utils)
mpi_supervisor() (in module metawards.app)
N
N_INF_CLASSES() (metawards.Disease method)
n_inf_wards (metawards.Population attribute)
name() (metawards.utils.Profiler method)
Network (class in metawards)
nlinks (metawards.Network attribute)
nnodes (metawards.Network attribute)
Node (class in metawards)
Nodes (class in metawards)
nodes (metawards.Network attribute)
nodes_to_track (metawards.InputFiles attribute)
NullProfiler (class in metawards.utils)
O
open() (metawards.OutputFiles method)
open_subdir() (metawards.OutputFiles method)
output_default() (in module metawards.extractors)
output_default_omp() (in module metawards.extractors)
output_dir() (metawards.OutputFiles method)
OutputFiles (class in metawards)
P
Parameters (class in metawards)
params (metawards.Network attribute)
parse_args() (in module metawards.app)
play (metawards.InputFiles attribute)
(metawards.Network attribute)
play_size (metawards.InputFiles attribute)
plength_day (metawards.Parameters attribute)
plinks (metawards.Network attribute)
Population (class in metawards)
population (metawards.Population attribute)
Populations (class in metawards)
position (metawards.InputFiles attribute)
prepare_worker() (in module metawards.utils)
Profiler (class in metawards.utils)
progress (metawards.Disease attribute)
R
ran_binomial() (in module metawards.utils)
ran_int() (in module metawards.utils)
ran_uniform() (in module metawards.utils)
read() (metawards.VariableSet static method)
(metawards.VariableSets static method)
read_done_file() (in module metawards.utils)
read_variables() (metawards.Parameters static method)
recalculate_play_denominator_day() (in module metawards.utils)
recalculate_work_denominator_day() (in module metawards.utils)
recovereds (metawards.Population attribute)
redirect_output() (in module metawards.utils)
remove() (metawards.OutputFiles static method)
repeat() (metawards.VariableSets method)
repeat_index() (metawards.VariableSet method)
rescale_play_matrix() (in module metawards.utils)
(metawards.Network method)
reset_everything() (in module metawards.utils)
(metawards.Network method)
reset_play_matrix() (in module metawards.utils)
reset_play_susceptibles() (in module metawards.utils)
reset_work_matrix() (in module metawards.utils)
resize (metawards.Links attribute)
(metawards.Nodes attribute)
resize_array() (in module metawards.utils)
run() (metawards.Network method)
run_model() (in module metawards.utils)
run_models() (in module metawards.utils)
run_worker() (in module metawards.utils)
S
save_summary_plots() (in module metawards.analysis)
scoop_supervisor() (in module metawards.app)
seed (metawards.InputFiles attribute)
seed_ran_binomial() (in module metawards.utils)
set_disease() (metawards.Parameters method)
set_input_files() (metawards.Parameters method)
set_variables() (metawards.Parameters method)
setup_additional_seeds() (in module metawards.iterators)
setup_output_default() (in module metawards.extractors)
setup_seed_all_wards() (in module metawards.iterators)
setup_seed_specified_ward() (in module metawards.iterators)
setup_seed_wards() (in module metawards.iterators)
start() (metawards.utils.Profiler method)
stop() (metawards.utils.Profiler method)
string_to_ints() (in module metawards.utils)
susceptibles (metawards.Population attribute)
T
to_links (metawards.Network attribute)
to_seed (metawards.Network attribute)
too_ill_to_move (metawards.Disease attribute)
total (metawards.Population attribute)
total() (metawards.utils.Profiler method)
U
update() (metawards.Network method)
user_params (metawards.Parameters attribute)
uv (metawards.InputFiles attribute)
UV (metawards.Parameters attribute)
uv_filename (metawards.Parameters attribute)
V
vaccinate_same_id() (in module metawards.utils)
variable_names() (metawards.VariableSet method)
variable_values() (metawards.VariableSet method)
variables() (metawards.VariableSet method)
VariableSet (class in metawards)
VariableSets (class in metawards)
W
weekend (metawards.InputFiles attribute)
(metawards.Network attribute)
work (metawards.InputFiles attribute)
Workspace (class in metawards.utils)
X
x (metawards.Node attribute)
Y
y (metawards.Node attribute)
Z
zero_all (metawards.utils.Workspace attribute)