metawards.extractors.output_incidence(nthreads: int = 1, **kwargs)[source]

This will incidence of infection for each ward for each timestep. This is the sum of infections from disease class 0 to 2 inclusive

  • network (Network) – The network over which the outbreak is being modelled

  • population (Population) – The population experiencing the outbreak

  • output_dir (OutputFiles) – The directory in which to place all output files

  • workspace (Workspace) – A workspace that can be used to extract data

  • kwargs – Extra argumentst that are ignored by this function